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Researcher Information

last modified:2021/09/15

Assistant Professor URIU, Koichiro

Faculty, Affiliation

Faculty of Biological Science and Technology,Institute of Science and Engineering

College and School Educational Field

Division of Natural Sciences, Graduate School of Natural Science and Technology
Course in Biosystems, School of Biological Science and Technology, College of Science and Engineering

Laboratory

Academic Background

Career

Year & Month of Birth

Academic Society

Japanese Society for Mathematical Biology
Japanese Society of Developmental Biologists
The Molecular Biology Society of Japan
Japanese Society for Chronobiology

Award

Specialities

Speciality Keywords

Research Themes

Books

Papers

  •  Complementary phase responses via functional differentiation of dual negative feedback loops Koichiro Uriu, Hajime Tei PLoS Computational Biology 17 3 e1008774 2021/03/08
  •  From local resynchronization to global pattern recovery in the zebrafish segmentation clock Koichiro Uriu, Bo-Kai Liao, Andrew C. Oates, Luis G. Morelli Elife 10 e61358 2021/02/15
  •  Synchronization dynamics of mobile oscillators in the presence of coupling delays Petrungaro G., Uriu K., Morelli L.G. Phys. Rev. E  99 062207 2019/06/10
  •  A saturated reaction in repressor synthesis creates a daytime dead zone in circadian clocks Uriu K, Tei H PLoS Computational Biology 15 2 e1006787 2019/02/19
  •  Information flow in the presence of cell mixing and signaling delays during embryonic development Petrungaro G, Morelli LG, Uriu K Seminars in Cell & Developmental Biology 2018/10/11

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  •  Determining the impact of cell mixing on signaling during development Koichiro Uriu, Luis G Morelli Dev. Growth. Differ. 59 5 351-368 2017/06/19
  •  Assessment of instructions on protection against food contaminated with radiocesium in Japan in 2011 Mayumi Seto, Koichiro Uriu, Isao Kawaguchi, Hiroyuki Yokomizo Risk Analysis 2017/09/07
  •  Mobility-induced persistent chimera states Petrungaro G., Uriu K., Morelli LG. Phys. Rev. E 96 062210 2017/12/18
  •  A framework for quantification and physical modeling of cell mixing applied to oscillator synchronization in vertebrate somitogenesis Koichiro Uriu, Rajasekaran Bhavna, Andrew C Oates, Luis G Morelli Biol. Open 2017/06/29
  •  Feedback loops interlocked at competitive binding sites amplify and facilitate genetic oscillations Koichiro Uriu, Hajime Tei J. Theor. Biol. 428 56-64 2017/09/07
  •  Dynamics of mobile coupled phase oscillators Koichiro Uriu, Saul Ares, Andrew C. Oates, Luis G. Morelli Physical Review E 87 032911 2013/03/21
  •  Interplay between intercellular signaling and cell movement in development Koichiro Uriu, Luis G. Morelli, Andrew C. Oates Seminars in Cell & Developmental Biology 35 66-72 2014/11/05
  •  Collective cell movement promotes synchronization of coupled genetic oscillators Koichiro Uriu, Luis G. Morelli Biophysical Journal 107 2 514-526 2014/07/15
  •  Sample size allocation for food item radiation monitoring and safety inspection Mayumi Seto, Koichiro Uriu Risk Analysis 35 3 409-422 2014/09/26
  •  Genetic oscillators in development. Koichiro Uriu Development, Growth & Differentiation 58 1 16-30 2016/01/11
  •  Object Segmentation and Ground Truth in 3D Embryonic Imaging Bhavna Rajasekaran, Koichiro Uriu, Guillaume Valentin, Jean-Yves Tinevez, Andrew C. Oates  PLOS One 11 6 e0150853 2016/06/22

Conference Presentations

  • Continuum limit of mobile genetic oscillators in vertebrate segment formation(conference:31st JSMB Annual Meeting)(2021/09/13)
  • Synchronization dynamics of the zebrafish segmentation clock: effect of delayed coupling and period gradient(conference:54th Annual Meeting of JSDB (Online))(2021/06/17)
  • Functional differentiation of negative feedback loops in circadian clock system(2020/12/02)
  • Complementary phase responses by functional differentiation of mammalian Period genes(2020/09/26)
  • Complementary phase responses by functional differentiation of dual negative feedback loops in circadian clocks(2020/09/20)

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  • Mathematical modeling of period after effect(conference:The 26 Annual Meeting of the Japanese Society for Chronobiology)(2019/10/12)
  • Resynchronization dynamics of the vertebrate segmentation clock(conference:Japanese Society for Mathematical Biology 2019 Conference)(2019/09/14)
  • Resynchronization of the zebrafish segmentation clock in Delta-Notch mutants(conference:52nd Annual Meeting of the Japanese Society of Developmental Biologists)(2019/05/14)
  • Dead zone formation by saturated reactions in circadian clocks(conference:The 25th Annual Meeting of the Japanese Society for Chronobiology)(2018/10/20)
  • Interplay between cell movement and intercellular signaling in development(conference:The JSDB-GfE young scientist exchange meeting 2018)(2018/10/11)
  • Dead zone formation by negative feedback loops in the circadian clocks(conference:2018 Annual Meeting of the Society for Mathematical Biology & the Japanese Society for Mathematical Biology)(2018/07/08)
  • Resynchronization dynamics of the zebrafish segmentation clock(conference:Joint Annual meeting of JSDB 51st and JSCB 70th)(2018/06/05)
  • Synchrony recovery of the zebrafish segmentation clock.(conference:International young scientists workshop on neural development & stem cells 2018)(2018/03/19)
  • A novel degradation pathway of REV-ERBs amplifies mammalian circadian rhythms(conference:Consortium of Biological Sciences 2017)(2017/12/09)
  • A novel degradation pathway of REV-ERBs amplifies mammalian circadian rhythms(2017/10/28)
  • Physical modeling of oscillator resynchronization after perturbation of Delta-Notch signaling in zebrafish presomitic mesoderm(conference:50th annual meeting of the Japanese Society of Developmental Biologists)(2017/05/10)
  • Feedback loops interlocked at competitive binding sites amplify mammalian circadian oscillations(2016/11/12)
  • Genetic Oscillations by Positive and Negative Feedback Loops Interlocked at Competitive Binding Sites (conference:2016 Annual Meeting of Japanese Society for Mathematical Biology)(2016/09/07)

Others

Arts and Fieldwork

Patent

Theme to the desired joint research

Grant-in-Aid for Scientific Research

Competitive research funding,Contribution

Collaborative research,Consignment study

Classes (Bachelors)

○Experiments in Biology(2017)
○Freshman Seminar I(2017)
○Animal Physiology Lab(2017)
○Presentation and Debate (Freshman Seminar II)(2017)
○Experiments in Biology(2017)
○Presentation and Debate (Freshman Seminar II)(2017)
○Gene・Genome・Neuron・Time・Life(2016)
○Gene・Genome・Neuron・Time・Life(2016)
○Experiments in Biology(2016)
○Freshman Seminar I(2016)
○Experiments in Biology(2016)
○Presentation and Debate (Freshman Seminar II)(2016)
○Animal Physiology Lab(2016)

Classes (Graduate Schools)

○Basic Systems Biology B(2016)

International Project

International Students

Lecture themes

Others (Social Activities)

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