Jump to contents

Researcher Information

last modified:2022/08/07

Assistant Professor GAKUHARI, Takashi

Mail

Faculty, Affiliation

Institute for the Study of Ancient Civilizations and Cultural Resources

College and School Educational Field


Laboratory

 TEL:076-264-6179

Academic Background

【Academic background(Doctoral/Master's Degree)】
The University of Tokyo Doctor Graduate School of Frontier Sciences Department of Integrated Bioscience 2013 Completed
【Academic background(Bachelor's Degree)】
Tokyo University of Agriculture Animal Science

Career

The University of Tokyo(2011-2012)
Kitasato University School of Medicine(2013/04/01-2015/10/31)

Year & Month of Birth

Academic Society

Japanese Society for Zooarchaeology
Japanese Society for Zooarchaeology



The Anthropological Society of Nippon

Award

The Anthropological Society of Nippon
The Anthropological Society of Nippon

Specialities

Molecular Bioarchaeology, Paleogenomics, Isotope Ecology, Archaeological Science

Speciality Keywords

Animal physiology,Equine Science,Zooarchaeology,Paleomolecular informatics (PI),Paleogenomics,Isotope Ecology,Archaeological Science

Research Themes

Development of GUI platform for paleogenomics.

Integrated biomolecular study for reconstructing ancient horse castration culture.

Development of on-site Paleogenomics for huaman and animal remains.

Bioisoscape analysis of zooarchaeological remains (Oxygen, Carbon, Nitrogen, Sulfur, Magnesium, Copper, Zinc, Iron, Calcium, Strontium, Lead etc.)

Radiocarbon Dating and Ancient DNA research of horse remains from Verteba cave, Ukraine

Improvement of HTS Analysis for ancient remains in Humid subtropical climate (Disease Project of Human, Coat Color and Locomotion Project of Horse and Starch Digestion Project of Dog and Wolf)

Preliminary study of ancient biomolecules for anceint DNA analysis.

Paleo-biogeographic Map Project of Domestic Animals in East Asia (Japan, Korea, China, Taiwan and Mongol)

Biology and Culturology of Domestic Animals

Books

Papers

  •  Multiple lines of evidence of early goose domestication in a 7,000-y-old rice cultivation village in the lower Yangtze River, China Masaki Eda, Yu Itahashi, Hiroki Kikuchi, Guoping Sun, Kai-hsuan Hsu, Takashi Gakuhari, Minoru Yoneda, Leping Jiang, Guomei Yang, and Shinichi Nakamura Proceedings of the National Academy of Sciences of the United States of America 119 12 e2117064119 2022/03/07
  •  Complete mitochondrial genome sequencing reveals double-buried Jomon individuals excavated from the Ikawazu shell-mound site were not in a mother-child relationship. Daisuke Waku, Takashi Gakuhari, Kae Koganebuchi, Minoru Yoneda, Osamu Kondo, Tadayuki Masuyama, Yasuhiro Yamada, Hiroki Oota Anthropological Science 129 3 2022/01
  •  Ancient genomics reveals tripartite origins of Japanese populations Niall P. Cooke,Valeria Mattiangeli,Lara M. Cassidy,Kenji Okazaki,Caroline A. Stokes,Shin Onbe,Satoshi Hatakeyama,Kenichi Machida,Kenji Kasai,Naoto Tomioka,Akihiko Matsumoto,Masafumi Ito,Yoshitaka Kojima,Daniel G. Bradley,Takashi Gakuhari,Shigeki Nakagome Science Advances 7 38 2021/09/17
  •  Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations Takashi Gakuhari,Shigeki Nakagome,Simon Rasmussen,Morten E. Allentoft,Takehiro Sato,Thorfinn Korneliussen,Blánaid Ní Chuinneagáin,Hiromi Matsumae,Kae Koganebuchi,Ryan Schmidt,Souichiro Mizushima,Osamu Kondo,Nobuo Shigehara,Minoru Yoneda,Ryosuke Kimura,Hajime Ishida,Tadayuki Masuyama,Yasuhiro Yamada,Atsushi Tajima,Hiroki Shibata,Atsushi Toyoda,Toshiyuki Tsurumoto,Tetsuaki Wakebe,Hiromi Shitara,Tsunehiko Hanihara,Eske Willerslev,Martin Sikora,Hiroki Oota Communications Biology 3 1 2020/12 
  •  Analysis of ancient human mitochondrial DNA from Verteba Cave, Ukraine: insights into the Late Neolithic-Chalcolithic Cucuteni–Tripolye culture Ryan W. Schmidt, Ken Wakabayashi, Daisuke Waku, Takashi Gakuhari, Kae Koganebuchi, Motoyuki Ogawa, Jordan K. Karsten, Mykhailo Sokhatsky, Hiroki Oota Anthropological Science 128 1-10 2020

show all

  •  Horse feeding strategy in ancient Japan and Korea: Stable carbon isotope analysis of the tooth enamel Manabu Uetsuki, Takashi Gakuhari, Naoto Isahaya 환경독성보건학회 심포지엄 및 학술대회. 32 5-6 2020
  •  Horse feeding technique of the Qin state during the Warring States Period, China Hiroki Kikuchi, Takashi Gakuhari, Long Cao 환경독성보건학회 심포지엄 및 학술대회 32 7 2020
  •  Analysis of ancient human mitochondrial DNA from Verteba Cave, Ukraine: insights into the Late Neolithic-Chalcolithic Cucuteni-Tripolye culture Ryan W. Schmidt,Ken Wakabayashi,Daisuke Waku,Takashi Gakuhari,Kae Koganebuchi,Motoyuki Ogawa,Jordan K. Karsten,Mykhailo Sokhatsky,Hiroki Oota ANTHROPOLOGICAL SCIENCE 128 1 1 2020/04
  •  Interpretation of bulk nitrogen and carbon isotopes in archaeological foodcrusts on potsherds Minoru Yoneda,Kaisei Kisida,Takashi Gakuhari,Takayuki Omori,Yoshiro Abe Rapid Communications in Mass Spectrometry 33 12 1097 2019/06/30
  •  A paleopathological approach to early human adaptation for wet-rice agriculture: The first case of Neolithic spinal tuberculosis at the Yangtze River Delta of China Kenji Okazaki,Hirofumi Takamuku,Shiori Yonemoto,Yu Itahashi,Takashi Gakuhari,Minoru Yoneda,Jie Chen International Journal of Paleopathology 24 236 2019/03
  •  The prehistoric peopling of Southeast Asia Hugh McColl,Fernando Racimo,Lasse Vinner,Fabrice Demeter,Takashi Gakuhari,J. Víctor Moreno-Mayar,George Van Driem,Uffe Gram Wilken,Andaine Seguin-Orlando,Constanza De la Fuente Castro,Sally Wasef,Rasmi Shoocongdej,Viengkeo Souksavatdy,Thongsa Sayavongkhamdy,Mohd Mokhtar Saidin,Morten E. Allentoft,Takehiro Sato,Anna Sapfo Malaspinas,Farhang A. Aghakhanian,Thorfinn Korneliussen,Ana Prohaska,Ashot Margaryan,Peter De Barros Damgaard,Supannee Kaewsutthi,Patcharee Lertrit,Thi Mai Huong Nguyen,Hsiao chun Hung,Thi Minh Tran,Huu Nghia Truong,Giang Hai Nguyen,Shaiful Shahidan,Ketut Wiradnyana,Hiromi Matsumae,Nobuo Shigehara,Minoru Yoneda,Hajime Ishida,Tadayuki Masuyama,Yasuhiro Yamada,Atsushi Tajima,Hiroki Shibata,Atsushi Toyoda,Tsunehiko Hanihara,Shigeki Nakagome,Thibaut Deviese,Anne Marie Bacon,Philippe Duringer,Jean Luc Ponche,Laura Shackelford,Elise Patole-Edoumba,Anh Tuan Nguyen,Bérénice Bellina-Pryce,Jean Christophe Galipaud,Rebecca Kinaston,Hallie Buckley,Christophe Pottier,Simon Rasmussen,Tom Higham,Robert A. Foley,Marta Mirazón Lahr,Ludovic Orlando,Martin Sikora,Maude E. Phipps,Hiroki Oota,Charles Higham,David M. Lambert,Eske Willerslev Science 361 6397 88 2018/07/06
  •  A new targeted capture method using bacterial artificial chromosome (BAC) libraries as baits for sequencing relatively large genes. Koganebuchi K,Gakuhari T,Takeshima H,Sato K,Fujii K,Kumabe T,Kasagi S,Sato T,Tajima A,Shibata H,Ogawa M,Oota H PloS one 13 7 e0200170 2018
  •  Isotopic comparison of gelatin extracted from bone powder with that from bone chunk and development of a framework for comparison of different extraction methods Takumi Tsutaya,Takashi Gakuhari,Akifumi Asahara,Minoru Yoneda Journal of Archaeological Science: Reports 11 99 2017/02/01
  •  From cradle to grave: multi-isotopic investigations on the life history of a higher-status female from Edo-period Japan Takumi Tsuraya,Hiroshi Miyamoto,Hikaru Uno,Takayuki Omori,Takashi Gakuhari,Akiyoshi Inahara,Tomohito Nagaoka,Mikiko Abe,Minoru Yoneda ANTHROPOLOGICAL SCIENCE 124 3 185 2016/12
  •  Homogeneous diet of contemporary Japanese inferred from stable isotope ratios of hair Soichiro Kusaka,Eriko Ishimaru,Fujio Hyodo,Takashi Gakuhari,Minoru Yoneda,Takakazu Yumoto,Ichiro Tayasu SCIENTIFIC REPORTS 6 33122 2016/09
  •  Trial application of oxygen and carbon isotope analysis in tooth enamel for identification of past-war victims for discriminating between Japanese and US soldiers Someday H., Gakuhari T., Akai J., Araki Y., Kodera T., Tsumatori G., Kobayashi Y., Matsunaga S., Abe S., Hashimoto M., Saito M., Yoneda M., Ishida H. Forensic science international 261 2016
  •  Complete mitochondrial genomes of the tooth of a poached Bornean banteng (Bos javanicus lowi; Cetartiodactyla, Bovidae) Taichiro Ishige,Takashi Gakuhari,Kei Hanzawa,Tomohiro Kono,Indra Sunjoto,Jum Rafiah Abdul Sukor,Abdul Hamid Ahmad,Hisashi Matsubayashi Mitochondrial DNA 27 4 2453 2016
  •  Excavations at Daram and Tevsh Sites: A Report on Joint Mongolian-Japanese Excavations in Outer Mongolia Miyamoto Kazuo,Obata Hiroki,Adachi Tatsuro,Amgalantgus Tsend,Funahashi Kyoko,Gakuhari Takashi,Ito Shigeru,Kobayashi Koichi,Matsuzaki Hiroyuki,Nakahashi Takahiro,o,h 2016 
  •  Radiocarbon dating of one human and two dog burials from the Kamikuroiwa rock shelter site, Ehime Prefecture Gakuhari et al. Anthropological Science 123 2 87-94 2015
  •  Complete mitochondrial genomes of the tooth of a poached Bornean banteng (Bos javanicus lowi; Cetartiodactyla, Bovidae) Ishige, Gakuhari et al. (equal contribution) Mitchondria DNA 2015
  •  Strontium Isotope Analysis of Prehistoric Faunal Remains Excavated from Fais Island in Micronesia Gakuhari T., Into M., Nakano T., Yoneda M. People and Culture in Oceania 29 69-81 2014
  •  First molecular data on Bornean banteng Bos Javanicus lowi (Cetartiodactyla, Bovidae) from Sabah, Malaysian Borneo MATSUBAYASHI Hisashi,HANZAWA Kei,KONO Tomohiro,ISHIGE Taichiro,GAKUHARI Takashi,LAGAN Peter,SUNJOTO Indra,SUKOR Jum Rafiah Abdul,SINUN Waidi,Ahmad Abdul Hamid Mammalia 52 1 1 2014/01/25
  •  Pleistocene human remains from Shiraho-Saonetabaru Cave on Ishigaki Island, Okinawa, Japan, and their radiocarbon dating Ryohei Nakagawa,Naomi Doi,Yuichiro Nishioka,Shin Nunami,Heizaburo Yamauchi,Masaki Fujita,Shinji Yamazaki,Masaaki Yamamoto,Chiaki Katagiri,Hitoshi Mukai,Hiroyuki Matsuzaki,Takashi Gakuhari,Mai Takigami,Minoru Yoneda ANTHROPOLOGICAL SCIENCE 118 3 173 2010/12
  •  Homogeneous diet of contemporary Japanese inferred from stable isotope ratios of hair Soichiro Kusaka, Eriko Ishimaru, Fujio Hyodo, Takashi Gakuhari, Minoru Yoneda, Takakazu Yumoto, Ichiro Tayasu Scientific Reports 6 33122

Conference Presentations

  • The preliminary report for the deep sequencing of the prehistoric Jomon genome from the Japanese archipelago(conference:Society for Molecular Biology and Evolution Conference )(2016/07/04)
  • Bioisoscape Analysis for Zooarchaeological Research of Horse Production System and Evolution in East Asia(conference:7th Worldwide Conference of the SEAA)(2016/06/09)
  • Ancient DNA analsis of horse remains in East Asia using Next-Generation Sequensing (NGS)(conference:Japanese Society of Equine Science)(2015/12/01)
  • DEVELOPMENT OF ANCIENT HORSE CULTURE IN EAST ASIA (conference:The International Council for Archaeozoology (ICAZ))(2014/09)

Others

Arts and Fieldwork

Patent

Theme to the desired joint research

Grant-in-Aid for Scientific Research

○2021「パレオゲノミクス解析プラットフォーム開発とその応用」(2020-2021) 
○2021「中国文明起源解明の新・考古学イニシアティブ」(2020-2021) 
○2022「西アジアにおける先史遊牧民の起源と乳製品利用」(2020-2022) 
○2022「高句麗・渤海を東部ユーラシア史に位置づけるための基礎的研究」(2020-2022) 
○「中東部族社会の起源:アラビア半島先原史遊牧文化の包括的研究」(2019-2023) 
○「エジプト、北サッカラ遺跡における新王国時代墓地の総合的調査研究」(2019-2022) 
○「時空間的集団遺伝学モデリングによる現代日本人の進化史の解明」(2019-2021) 
○「遺跡出土馬のゲノムワイド解析に基づく日本列島馬の起源と交雑史に関する研究」(2018-2020) 
○「IoT技術を用いた超小型歯エナメル質自動前処理装置の開発とその応用」(2018-2019) 
○「元素分析による身元不明遺体の出身地域推定の検討」(2016-2019) 
○「新規データに基づく東アジアにおける家畜化および家畜利用に関する総合的研究」(2015-2019) 
○「同位体化学的手法に基づく新石器時代の長江下流域におけるヒトの移動性復元」(2016-) 
○「西日本出土古人骨に対するゲノム解析の可能性調査」(2015-) 
○「シン・パレオゲノミクスが創る博物館資料群活用の新展開」(2021-2023) 
○「原シルクロードの形成-中央アジア山岳地帯の初期開発史に関する総合研究-」(2021-2025) 
○「馬車から騎馬へ:中国古代における家畜史と人類史の再構築」(2020-2024) 

Competitive research funding,Contribution

Collaborative research,Consignment study

Classes (Bachelors)

○Survey of Archaeology and Cultural Resource Studies A(2021)
○Introduction to Humanity B(2021)
○Survey of Field Studies of Cultures A(2021)
○Seminar of Graduation thesis B(2021)
○Seminar in Area Archaeology A2(2021)
○Survey of Field Studies of Cultures B(2021)
○Survey of Cultural Heritage Studies B(2021)
○Methodology of Field Research A(2021)
○Survey of Cultural Heritage Studies A(2021)
○Methodology of Field Research B(2021)
○Basic Practice of Field Research(2021)
○Seminar of Graduation thesis A(2021)
○Practice of Cultural Heritage Studies C(2021)
○Practice of Cultural Heritage Studies D(2021)
○Survey of Archaeology and Cultural Resource Studies B(2021)
○Methids of Cultural Resource Studies(2021)
○Methods of Archaeolofy(2021)
○Basic Practice of Program Studies(2021)
○Archaeological Science A(2021)
○Archaeological Science B(2021)
○Comparative Archaeology A1(2021)
○Comparative Archaeology A2(2021)
○Practice of Cultural Heritage Studies A(2021)
○Practice of Cultural Heritage Studies B(2021)
○Seminar in Comparative Archaeology B(2021)
○Introduction to Cultural Resource Studies 1(2020)
○Introduction to Humanity B(2020)
○Survey of Field Studies of Cultures A(2020)
○Methodology of Field Research B(2020)
○Introduction to Humanity 1(2020)
○Survey of Field Studies of Cultures(2020)
○Area Archaeology A(2020)
○Introduction to Humanity B(2020)
○Survey of Field Studies of Cultures A(2020)
○Survey of Field Studies of Cultures B(2020)
○Survey of Cultural Heritage Studies B(2020)
○Methodology of Field Research A(2020)
○Methodology of Field Research B(2020)
○Basic Practice of Field Research(2020)
○Practice of Cultural Heritage Studies A(2020)
○Practice of Cultural Heritage Studies B(2020)
○Practice of Cultural Heritage Studies C(2020)
○Practice of Cultural Heritage Studies D(2020)
○Methodology of Field Research(2020)
○Area Archaeology A1(2020)
○Area Archaeology A2(2020)
○Survey of Archaeology and Cultural Resource Studies A(2020)
○Survey of Archaeology and Cultural Resource Studies B(2020)
○Introduction to Cultural Resource Studies 1(2019)
○Transdisciplinary Laboratory rotation Ia(2019)
○Transdisciplinary Laboratory rotation Ib(2019)
○Survey of Cultural Heritage Studies A(2018)
○Survey of Cultural Heritage Studies B(2018)
○Survey of Cultural Heritage Studies(2018)

Classes (Graduate Schools)

○Introduction to Practical Data Analysis and Statistics b(2021)
○Science in Archaeology a(2021)
○Science in Archaeology b(2021)
○Introduction to Cultural Resource Studies a(2021)
○Introduction to Cultural Resource Studies 1(2020)
○Introduction to Cultural Resource Studies 1(2020)
○Science in Archaeology a(2020)
○Science in Archaeology b(2020)
○Introduction to Cultural Resource Studies a(2020)
○Introduction to Cultural Resource Studies 1(2019)
○Introduction to Cultural Resource Studies 1(2019)
○Science in Archaeology(2019)
○Introduction to Cultural Resource Studies(2019)
○Introduction to Cultural Resource Studies 1(2018)
○Science in Archaeology(2018)
○Introduction to Cultural Resource Studies(2018)

International Project

International Students

Lecture themes

Others (Social Activities)

To Page Top